Ground Truth
← Ground Truth overview
proteinTP53BRCA1CFTRHBBPAH
41 precomputed genes

CFTR

· Cystic fibrosis
AI wrongAI rightno data
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what is CFTR?

A channel that moves salt (chloride) in and out of cells. When it fails, mucus turns thick and clogs the lungs and gut, causing cystic fibrosis.


how the AI did on CFTR

AlphaMissense matched the confirmed verdict on 176 of 190 mutations (93%). It missed 11 and raised 3 false alarms.

accuracy
vs doctors
0.92
vs lab
n/a

Note: AlphaMissense was trained on ClinVar, so “vs doctors” partly grades it on its own answer key and reads high. The independent check is “vs lab.” why this matters →

▸ the breakdown · true / false positives
AI vs doctors
160TP
11FN
3FP
16TN

the mutation
M1V
Met → Val at position 1
✗ AI was wrongFN

AlphaMissense called it harmless, but it is disease-causing. A miss.

what each source says
AlphaMissense
the AI
0.178benign
ClinVar
doctors · ★★★
pathogenic↗
CFTR2
expert panel
pathogenic↗
Every CFTR variant: the raw evidence

Each row: what the AI guessed, and what each real source said. Doctors (ClinVar) is the clinical record the AI was tuned on.

MutationThe AI’s guessClinicalExpert panelDid the AI get it right?
M1Iharmful0.68harmful★★↗Not measured✓ right
M1Rharmful0.66harmful★★↗Not measured✓ right
M1Tharmful0.80harmful★★↗Not measured✓ right
M1Vharmless0.18harmful★★★↗harmful↗✗ missed it
P5Lharmful0.75harmful★★↗Not measured✓ right
S13Fharmful0.76harmful★★★↗harmful↗✓ right
L15Pharmful0.76harmful★★★↗harmful↗✓ right
G27Rharmful0.98harmful★★★↗harmful↗✓ right
R31Charmless0.11Not measuredharmless↗✓ right
A46Dharmful0.98harmful★★★↗harmful↗✓ right
S50Pharmful0.96harmful★★↗Not measured✓ right
E56Kharmful0.88harmful★★★↗harmful↗✓ right
W57Gharmful0.96harmful★★★↗harmful↗✓ right
W57Rharmful1.00harmful★★↗Not measured✓ right
E60Kharmful0.96harmful★★★↗harmful↗✓ right
P67Lharmful0.65harmful★★★↗harmful↗✓ right
P67Sharmful0.62harmful★★↗Not measured✓ right
R75Qharmless0.20Not measuredharmless↗✓ right
G85Eharmful0.99harmful★★★★↗harmful↗✓ right
G85Vharmful0.94harmful★★↗Not measured✓ right
G91Rharmful0.95harmful★★★↗harmful↗✓ right
E92Kharmful0.94harmful★★★↗harmful↗✓ right
Q98Rharmful0.94harmful★★★↗harmful↗✓ right
P99Lharmful0.97harmful★★★↗harmful↗✓ right
L102Pharmful0.98harmful★★↗Not measured✓ right
L102Rharmful0.95harmful★★★↗harmful↗✓ right
I105Nharmful0.96harmful★★↗Not measured✓ right
Y109Charmful0.73harmful★★↗Not measured✓ right
D110Eharmful0.72harmful★★↗Not measured✓ right
D110Hharmful0.64harmful★★★↗harmful↗✓ right
D110Nunsure0.36harmful★★↗Not measuredAI unsure
P111Aharmless0.12harmful★★↗Not measured✗ missed it
E116Kharmful0.85harmful★★★↗harmful↗✓ right
R117Charmful0.62harmful★★★↗harmful↗✓ right
R117Gharmful0.69harmful★★↗Not measured✓ right
R117Hharmless0.30harmful★★★★↗Not measured✗ missed it
R117Lharmful0.68harmful★★↗Not measured✓ right
R117Pharmful0.97harmful★★★↗harmful↗✓ right
G126Dharmful0.98harmful★★★↗Not measured✓ right
H139Lunsure0.54harmful★★↗Not measuredAI unsure
H139Rharmful0.90harmful★★★↗harmful↗✓ right
L145Hharmful0.93harmful★★↗Not measured✓ right
I148Tharmless0.12Not measuredharmless↗✓ right
G149Rharmful0.99harmful★★↗Not measured✓ right
M152Vharmless0.11harmful★★↗Not measured✗ missed it
Y161Dharmful0.99harmful★★★↗harmful↗✓ right
K162Eharmful0.91harmful★★↗Not measured✓ right
L165Sharmful0.97harmful★★★↗harmful↗✓ right
R170Hharmless0.16Not measuredharmless↗✓ right
I175Vharmless0.19harmful★★↗Not measured✗ missed it
G178Rharmful0.76harmful★★★↗harmful↗✓ right
F191Vharmful0.59harmful★★★↗harmful↗✓ right
D192Gharmful0.89harmful★★★↗harmful↗✓ right
E193Kharmful0.68harmful★★★↗harmful↗✓ right
G194Rharmful0.98harmful★★★↗harmful↗✓ right
H199Rharmful0.97harmful★★↗Not measured✓ right
H199Yharmful0.79harmful★★★↗harmful↗✓ right
P205Sharmful0.78harmful★★★↗harmful↗✓ right
P205Tharmful0.65harmful★★↗Not measured✓ right
L206Wharmful0.62harmful★★★↗harmful↗✓ right
L227Rharmful0.97harmful★★★↗harmful↗✓ right
V232Dharmful0.89harmful★★★↗harmful↗✓ right
Q237Eunsure0.46harmful★★↗Not measuredAI unsure
F311Lharmful0.98harmful★★★↗harmful↗✓ right
G314Rharmful0.99harmful★★↗Not measured✓ right
L320Vharmless0.16Not measuredharmless↗✓ right
R334Lharmful0.88harmful★★★↗harmful↗✓ right
R334Wharmful0.66harmful★★★★↗harmful↗✓ right
I336Kharmful0.98harmful★★★↗harmful↗✓ right
T338Iharmful0.83harmful★★★↗harmful↗✓ right
S341Pharmful0.95harmful★★★↗harmful↗✓ right
L346Pharmful0.99harmful★★★↗harmful↗✓ right
R347Hharmful0.85harmful★★★↗harmful↗✓ right
R347Lharmful0.97harmful★★↗Not measured✓ right
R347Pharmful0.99harmful★★★★↗harmful↗✓ right
R352Qharmful0.63harmful★★★↗harmful↗✓ right
S364Pharmful0.98harmful★★↗Not measured✓ right
L375Fharmful0.66harmful★★↗Not measured✓ right
E403Dharmless0.20harmful★★↗Not measured✗ missed it
L453Sharmful0.85harmful★★★↗harmful↗✓ right
A455Eharmful0.95harmful★★★★↗harmful↗✓ right
V456Aharmful0.68harmful★★★↗harmful↗✓ right
V456Fharmful0.57harmful★★↗Not measured✓ right
G458Vharmful0.96harmful★★↗Not measured✓ right
K464Eharmful0.90harmful★★↗Not measured✓ right
K464Nharmful0.96harmful★★↗Not measured✓ right
T465Nharmful0.76harmful★★↗Not measured✓ right
L467Pharmful0.99harmful★★★↗harmful↗✓ right
M469Vunsure0.51harmful★★↗Not measuredAI unsure
V470Mharmless0.05harmless★★↗Not measured✓ right
E474Kharmful0.93harmful★★★↗harmful↗✓ right
G480Charmful0.93harmful★★↗Not measured✓ right
G480Dharmful0.95harmful★★↗Not measured✓ right
S492Fharmful0.64harmful★★★↗harmful↗✓ right
Q493Rharmful0.73harmful★★↗Not measured✓ right
T501Aharmless0.25harmful★★↗Not measured✗ missed it
I502Tharmful0.89harmful★★★↗harmful↗✓ right
I507Vharmless0.07harmless★★↗Not measured✓ right
F508Charmful0.87Not measuredharmless↗✗ false alarm
D513Gharmful0.88harmful★★★↗harmful↗✓ right
V520Fharmful0.88harmful★★★↗harmful↗✓ right
S549Nharmful0.95harmful★★★↗harmful↗✓ right
S549Rharmful0.99harmful★★★↗harmful↗✓ right
G551Dharmful0.99harmful★★★★↗harmful↗✓ right
G551Sharmful0.88harmful★★★↗harmful↗✓ right
Q552Pharmful0.96harmful★★↗Not measured✓ right
I556Vharmless0.12harmless★★↗Not measured✓ right
L558Sharmful0.97harmful★★★↗harmful↗✓ right
A559Pharmful0.99harmful★★↗Not measured✓ right
A559Tharmful0.93harmful★★★↗harmful↗✓ right
R560Kharmful0.79harmful★★★↗harmful↗✓ right
R560Sharmful0.99harmful★★★↗harmful↗✓ right
R560Tharmful0.98harmful★★★★↗harmful↗✓ right
A561Eharmful0.98harmful★★★↗harmful↗✓ right
V562Iharmless0.07Not measuredharmless↗✓ right
Y563Charmful0.80harmful★★↗Not measured✓ right
Y563Dharmful1.00harmful★★★↗harmful↗✓ right
Y563Hharmful0.97harmful★★↗Not measured✓ right
Y563Nharmful0.96harmful★★★↗harmful↗✓ right
Y569Charmful0.76harmful★★↗Not measured✓ right
Y569Dharmful1.00harmful★★★↗harmful↗✓ right
Y569Hharmful0.96harmful★★↗Not measured✓ right
L571Sharmful0.94harmful★★↗Not measured✓ right
D572Nharmful0.93harmful★★↗Not measured✓ right
P574Hharmful0.98harmful★★★↗harmful↗✓ right
G576Aharmless0.19Not measuredharmless↗✓ right
S589Iharmless0.16harmful★★↗Not measured✗ missed it
S589Nharmless0.09harmful★★↗Not measured✗ missed it
I601Funsure0.49harmful★★★↗harmful↗AI unsure
I601Tharmful0.97harmful★★↗Not measured✓ right
T604Iharmful0.92harmful★★↗Not measured✓ right
H609Rharmful0.78harmful★★★↗harmful↗✓ right
A613Tunsure0.39harmful★★★↗harmful↗AI unsure
D614Gunsure0.41harmful★★↗Not measuredAI unsure
I618Tharmful0.92harmful★★↗Not measured✓ right
G628Aharmful0.66harmful★★↗Not measured✓ right
G628Rharmful0.88harmful★★★↗harmful↗✓ right
R668Charmless0.10Not measuredharmless↗✓ right
V754Mharmless0.07Not measuredharmless↗✓ right
I807Mharmless0.16Not measuredharmless↗✓ right
D836Yharmless0.17Not measuredharmless↗✓ right
Y913Cunsure0.38harmful★★↗Not measuredAI unsure
L927Pharmful0.93harmful★★★↗harmful↗✓ right
S945Lharmful0.83harmful★★★↗harmful↗✓ right
G970Dharmful0.76harmful★★★↗harmful↗✓ right
G970Rharmful0.66harmful★★★↗harmful↗✓ right
D979Vharmful0.99harmful★★★↗harmful↗✓ right
L997Fharmful0.74Not measuredharmless↗✗ false alarm
I1005Rharmful0.89harmful★★↗Not measured✓ right
A1006Eharmful0.80harmful★★★↗harmful↗✓ right
P1021Lunsure0.43harmful★★↗Not measuredAI unsure
P1021Tunsure0.54harmful★★↗Not measuredAI unsure
I1023Rharmful0.90harmful★★↗Not measured✓ right
I1027Tharmless0.31Not measuredharmless↗✓ right
Y1032Charmless0.27harmful★★↗Not measured✗ missed it
T1036Iharmful0.86harmful★★↗Not measured✓ right
T1036Nharmful0.77harmful★★★↗harmful↗✓ right
S1045Yunsure0.56harmful★★↗Not measuredAI unsure
T1053Iunsure0.35Not measuredharmless↗AI unsure
H1054Dharmful0.95harmful★★★↗harmful↗✓ right
G1061Rharmful0.99harmful★★★↗harmful↗✓ right
L1065Pharmful0.98harmful★★★↗harmful↗✓ right
L1065Rharmful0.96harmful★★↗Not measured✓ right
R1066Charmful0.92harmful★★★↗harmful↗✓ right
R1066Hharmful0.80harmful★★★↗harmful↗✓ right
R1066Lharmful0.97harmful★★↗Not measured✓ right
Q1071Pharmful0.72harmful★★↗Not measured✓ right
Y1073Cunsure0.46harmful★★↗Not measuredAI unsure
F1074Lharmful0.97harmful★★↗Not measured✓ right
L1077Pharmful0.98harmful★★★↗harmful↗✓ right
H1085Rharmful0.93harmful★★↗Not measured✓ right
A1087Pharmful0.99harmful★★↗Not measured✓ right
W1098Charmful0.87harmful★★★↗harmful↗✓ right
W1098Rharmful0.98harmful★★★↗harmful↗✓ right
Q1100Pharmful0.95harmful★★↗Not measured✓ right
M1101Kharmful0.80harmful★★★↗harmful↗✓ right
M1101Rharmful0.77harmful★★★↗harmful↗✓ right
S1118Fharmful0.91harmful★★★↗harmful↗✓ right
M1137Rharmful0.96harmful★★↗Not measured✓ right
S1159Fharmful0.93harmful★★★↗harmful↗✓ right
S1159Pharmful0.80harmful★★★↗harmful↗✓ right
R1162Lharmful0.89Not measuredharmless↗✗ false alarm
I1234Vharmless0.08harmful★★★↗harmful↗✗ missed it
S1235Rharmless0.19Not measuredharmless↗✓ right
V1240Gunsure0.56harmful★★★↗harmful↗AI unsure
G1244Eharmful0.99harmful★★★↗harmful↗✓ right
T1246Iharmful0.98harmful★★↗Not measured✓ right
G1247Rharmful0.95harmful★★↗Not measured✓ right
G1249Rharmful0.95harmful★★★↗harmful↗✓ right
S1251Nharmful0.93harmful★★★↗harmful↗✓ right
S1255Pharmful0.79harmful★★★↗harmful↗✓ right
I1269Nharmful0.92harmful★★★↗harmful↗✓ right
W1282Gharmful0.91harmful★★↗Not measured✓ right
W1282Rharmful0.99harmful★★↗Not measured✓ right
R1283Mharmful0.97harmful★★★↗harmful↗✓ right
R1283Sharmful0.99harmful★★↗Not measured✓ right
Q1291Hharmful0.97harmful★★↗Not measured✓ right
N1303Iharmful0.79harmful★★↗Not measured✓ right
N1303Kharmful0.99harmful★★★★↗harmful↗✓ right
L1324Pharmful1.00harmful★★★↗harmful↗✓ right
L1335Pharmful0.82harmful★★★↗harmful↗✓ right
G1349Dharmful0.98harmful★★★↗harmful↗✓ right
I1366Nharmful0.95harmful★★★↗harmful↗✓ right
H1375Pharmful0.62harmful★★★↗harmful↗✓ right
204 variants · “harmful” = disease-causing, “harmless” = benign. Use arrow keys to move between rows and Enter to select one.